psamm.datasource.kegg
– KEGG data parser¶
Module related to loading KEGG database files.
-
class
psamm.datasource.kegg.
CompoundEntry
(values, filemark=None)¶ Representation of entry in KEGG compound file
-
exception
psamm.datasource.kegg.
ParseError
¶ Exception used to signal errors while parsing
-
class
psamm.datasource.kegg.
ReactionEntry
(values, filemark=None)¶ Representation of entry in KEGG reaction file
-
psamm.datasource.kegg.
parse_compound_file
(f, context=None)¶ Iterate over the compound entries in the given file.
-
psamm.datasource.kegg.
parse_reaction
(s)¶ Parse a KEGG reaction string
-
psamm.datasource.kegg.
parse_reaction_file
(f, context=None)¶ Iterate over the reaction entries in the given file.