PSAMM Tutorials

• Installation and Materials
  • Downloading the PSAMM Tutorial Data
  • PSAMM Installation
  • PSAMM Model Collection
• Importing, Exporting, and working with Models with PSAMM
  • Import Functions in PSAMM
  • Importing Existing Models (psamm-import)
  • YAML Format and Model Organization
  • Version Control with the YAML Format
  • Using PSAMM to export the model to other Software
• Model Curation
  • Materials
  • Common Errors in Metabolic Reconstructions
  • PSAMM Warnings
  • Reaction Consistency in PSAMM
  • Gap Identification in PSAMM
  • Search Functions in PSAMM
  • Duplicate Reaction Checks
• Constraint Based Analysis with PSAMM
  • Tutorial Materials
  • Constraint-based Flux Analysis with PSAMM
  • FBA in PSAMM