psamm.datasource.modelseed – ModelSEED data parser

Module related to loading ModelSEED database files.

class psamm.datasource.modelseed.CompoundEntry(id, names, formula, filemark=None)

Representation of entry in a ModelSEED compound table

exception psamm.datasource.modelseed.ParseError

Exception used to signal errors while parsing


Decode names in ModelSEED files

psamm.datasource.modelseed.parse_compound_file(f, context=None)

Iterate over the compound entries in the given file