psamm.translate_id – ID Translation Functions

class psamm.translate_id.TranslatedModel(ref_model, compound_map, reaction_map, compartment_map=None)

A NativeModel with translated ids based on reference model.

The compound_map, reaction_map and compartment_map are three dict that use original id as key and new id as value. Use write_model() to output yaml files.

write_model(dest, **kwargs)

Output model into YAML files.